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Looks like you're right:
http://pkg.kali.org/pkg/w3af
[2017-01-13] w3af 1.6.54+git20160429+1-0kali1 removed from kali-rolling (Kali Repository)

Thanks!

Don't need a firewall, just learn about services (like ssh), how to see whats running (like with netstat), and limit your attack surface this way. Also, don't even bother with antivirus. It just...

Those are false positives. AV will detect a lot of pentesting tools. If you ever use metasploit to create binaries, it will detect a lot of those too. For example, one reason is that a lot of tools...

I'm confused as to why so many packages are tagged for autoremove, especially w3af?

The following packages were automatically installed and are no longer required:
empathy empathy-common...