Did you fix yours Kali repos?
if Not check this out:
http://docs.kali.org/frequently-asked-questions
However reading additional resources my sources.list file looks like that:
deb [arch=i386,amd64,armel,armhf]
http://http.kali.org/kali kali-dev main contrib non-free
deb [arch=i386,amd64,armel,armhf]
http://http.kali.org/kali kali-dev main/debian-installer
deb-src
http://http.kali.org/kali kali-dev main contrib non-free
deb [arch=i386,amd64,armel,armhf]
http://http.kali.org/kali kali main contrib non-free
deb [arch=i386,amd64,armel,armhf]
http://http.kali.org/kali kali main/debian-installer
deb-src
http://http.kali.org/kali kali main contrib non-free
deb [arch=i386,amd64,armel,armhf]
http://security.kali.org/kali-security kali/updates main contrib non-free
deb-src
http://security.kali.org/kali-security kali/updates main contrib non-free