sudo apt-get install linux-headers-$(uname -r)
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Unable to locate package linux-headers-4.9.0-kali3-amd64
E: Couldn't find any package by glob 'linux-headers-4.9.0-kali3-amd64'
E: Couldn't find any package by regex 'linux-headers-4.9.0-kali3-amd64'
sudo apt-get update && sudo apt-get dist-upgrade && sudo apt-get install linux-headers-$(uname -r)