So apparently I was stupid...
I downloaded Recon-NG and Armitage and installed them on Kali. I wanted to add them to the Kali menu. Instead of taking the time to find how to do this, I instead went to the edit menu function in Gnome... I saw all the links under OTHER... I added Recon and Armitage links to that same group and saved... and now the Kali menu is gone and all the shortcuts are in Alphabetical order under Other.
So my questions:
1) How do I restore the Kali menu listing all the shortcuts in the nice organized fashion?
2) Where is the correct place to add shortcuts to new tools and have them show up in the Kali menu?
Thanks!